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These plant libraries are key to humanity’s future. Let’s preserve them.

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Wednesday, March 20, 2024

Cassandra Quave is a professor of dermatology and human health at Emory University School of Medicine and author of “The Plant Hunter: A Scientist’s Quest for Nature’s Next Medicines.”I never meant to become curator of the Emory University herbarium. It happened by chance, 12 years ago. I needed access to an herbarium — a library of plant specimens and information about them.On that first visit, the herbarium workroom was dusty and filled with old furniture from the biology department. The collection room fared no better: century-old fragments of plants pasted onto large sheets of paper were stuffed into manila folders, packed too tightly in metal cabinets lined with mercury-dipped felt used as an insect repellent.I took on the role of curator on a voluntary basis: It was made clear to me that there would be no salary, no operational budget. If I wanted to rescue and revitalize the herbarium, I would need to raise the money myself. I wasn’t surprised. Despite their vital importance to biodiversity research, herbaria are undervalued and increasingly endangered.An herbarium serves as a natural-history museum that scientists depend on for research on climate change, environmental pollution, biodiversity, plant pathology, evolution, ecosystem dynamics and even the discovery of new foods and drugs. There are about 750 active herbaria in the United States, 490 of them at universities. University herbaria are critical resources for educating the next generation of scientists studying and safeguarding plant life.But over the past five years, I’ve watched eight herbaria across the country shutter their doors or get packed up and shipped off to another site. In 2017, the closure of a 500,000-specimen herbarium at the University of Louisiana at Monroe required relocation to a non-university research institute in Texas.Most devastatingly, last month, Duke University decided to close its herbarium. A unique collection of 825,000 specimens of algae, bryophytes, lichen, fungi and plants, the century-old Duke Herbarium is one of the largest in the United States, the second-largest among private universities (after Harvard’s). It is home to an incredibly important collection of organisms from the southeastern United States coastal plains, a threatened area rich in biodiverse flora.The reasons herbaria are being closed are obvious, if flawed: A room full of dead plants that can cost tens or hundreds of thousands of dollars per year to operate is not as exciting as the latest multimillion-dollar microscope or as easy to fund through government grants as biomedical research. Power in science comes down to money and space; herbaria require a lot of space, and even though they serve as a kind of library of life on Earth, they bring in little to no grant money. They are often subject to the resource-allocation priorities of a university’s leadership at any given time, making them incredibly vulnerable to neglect or divestment.But herbaria are key to biodiversity and humanity’s future. Earth is home to an estimated 2.5 million fungi and up to 500,000 types of plants (including bryophytes and algae), and we have yet to scientifically describe and name all of them. In the past three years, scientists have named more than 8,600 plants as new to science, according to Britain’s Royal Botanic Gardens, Kew. Yet even as scientists race to identify, describe and name species, we are losing many at an alarming pace. Indeed, Kew estimated that 3 in 4 species yet to be described are likely at risk of extinction. Moreover, 45 percent of all flowering plants are likely at risk of extinction largely because of human-created pressures, such as conversion of lands for agriculture and urban expansion, resource extraction, and climate change.To save biodiversity, we must first document and monitor it to identify what drives species loss and then develop solutions. My work as an ethnobotanist leads me to biodiversity hotspots — areas that are biologically rich and deeply threatened — across the globe, where I work with my team and local collaborators and communities to collect plants in the wild, pressing them between sheets of newspaper and drying them so they can be deposited into an herbarium and studied. This is a tried and true process based on techniques developed by Italian physician-botanist Luca Ghini (1490-1556) and later used by the father of modern taxonomy, Carl Linnaeus (1707-1778), and evolutionary biologist Charles Darwin (1809-1882). For centuries, naturalists have collected specimens — foods such as black pepper and medicines like fever tree bark — that we now take for granted.When properly cared for, herbarium specimens can last centuries; the oldest extant herbarium is held in Rome, prepared nearly 500 years ago. Such specimens provide an incredibly important window into human history, illuminating which plants grew where in the world and when. For example, it is only thanks to herbarium specimens collected in the 1550s from a garden in Pisa, Italy, that we know what the first European-grown tomatoes — tomatoes were originally sourced from Mexico — looked like and what their genetic makeup was.Advanced tools in genetics and chemistry are opening new ways to learn more about past foods, medicines and wild plants and might hold clues for saving future crops from pests, disease and a changing climate. And imagine what scientists 500 years in the future could do with the specimens we collect and save today. Undoubtedly, many of the species I’ve collected and curated will no longer exist in nature in the next century, let alone in another five hundred years. These dried fragments of plant tissue might be all that is left for future generations to ponder.Over the past dozen years, I’ve been thrilled to see the Emory herbarium grow and once again become a vital resource for botanical research and education on campus. In addition to repairing and annotating specimens, we also brought the collection into the modern era through a digitization program, sharing images and collection data through the Southeast Regional Network of Expertise and Collections, making our herbarium accessible to students and scholars worldwide.This year, the Emory herbarium celebrates its 75th anniversary. But will it survive another 75 years? The diminishing value placed on university herbaria and taxonomic science threatens the very infrastructure necessary for effective environmental stewardship and the protection of endangered species. Herbaria are not just repositories of historical data; they are the bedrock of environmental conservation efforts. They are nature’s last hope in the battle against biodiversity loss and ecosystem collapse. We must do all we can to save them.

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Cassandra Quave is a professor of dermatology and human health at Emory University School of Medicine and author of “The Plant Hunter: A Scientist’s Quest for Nature’s Next Medicines.”

I never meant to become curator of the Emory University herbarium. It happened by chance, 12 years ago. I needed access to an herbarium — a library of plant specimens and information about them.

On that first visit, the herbarium workroom was dusty and filled with old furniture from the biology department. The collection room fared no better: century-old fragments of plants pasted onto large sheets of paper were stuffed into manila folders, packed too tightly in metal cabinets lined with mercury-dipped felt used as an insect repellent.

I took on the role of curator on a voluntary basis: It was made clear to me that there would be no salary, no operational budget. If I wanted to rescue and revitalize the herbarium, I would need to raise the money myself. I wasn’t surprised. Despite their vital importance to biodiversity research, herbaria are undervalued and increasingly endangered.

An herbarium serves as a natural-history museum that scientists depend on for research on climate change, environmental pollution, biodiversity, plant pathology, evolution, ecosystem dynamics and even the discovery of new foods and drugs. There are about 750 active herbaria in the United States, 490 of them at universities. University herbaria are critical resources for educating the next generation of scientists studying and safeguarding plant life.

But over the past five years, I’ve watched eight herbaria across the country shutter their doors or get packed up and shipped off to another site. In 2017, the closure of a 500,000-specimen herbarium at the University of Louisiana at Monroe required relocation to a non-university research institute in Texas.

Most devastatingly, last month, Duke University decided to close its herbarium. A unique collection of 825,000 specimens of algae, bryophytes, lichen, fungi and plants, the century-old Duke Herbarium is one of the largest in the United States, the second-largest among private universities (after Harvard’s). It is home to an incredibly important collection of organisms from the southeastern United States coastal plains, a threatened area rich in biodiverse flora.

The reasons herbaria are being closed are obvious, if flawed: A room full of dead plants that can cost tens or hundreds of thousands of dollars per year to operate is not as exciting as the latest multimillion-dollar microscope or as easy to fund through government grants as biomedical research. Power in science comes down to money and space; herbaria require a lot of space, and even though they serve as a kind of library of life on Earth, they bring in little to no grant money. They are often subject to the resource-allocation priorities of a university’s leadership at any given time, making them incredibly vulnerable to neglect or divestment.

But herbaria are key to biodiversity and humanity’s future. Earth is home to an estimated 2.5 million fungi and up to 500,000 types of plants (including bryophytes and algae), and we have yet to scientifically describe and name all of them. In the past three years, scientists have named more than 8,600 plants as new to science, according to Britain’s Royal Botanic Gardens, Kew. Yet even as scientists race to identify, describe and name species, we are losing many at an alarming pace. Indeed, Kew estimated that 3 in 4 species yet to be described are likely at risk of extinction. Moreover, 45 percent of all flowering plants are likely at risk of extinction largely because of human-created pressures, such as conversion of lands for agriculture and urban expansion, resource extraction, and climate change.

To save biodiversity, we must first document and monitor it to identify what drives species loss and then develop solutions. My work as an ethnobotanist leads me to biodiversity hotspots — areas that are biologically rich and deeply threatened — across the globe, where I work with my team and local collaborators and communities to collect plants in the wild, pressing them between sheets of newspaper and drying them so they can be deposited into an herbarium and studied. This is a tried and true process based on techniques developed by Italian physician-botanist Luca Ghini (1490-1556) and later used by the father of modern taxonomy, Carl Linnaeus (1707-1778), and evolutionary biologist Charles Darwin (1809-1882). For centuries, naturalists have collected specimens — foods such as black pepper and medicines like fever tree bark — that we now take for granted.

When properly cared for, herbarium specimens can last centuries; the oldest extant herbarium is held in Rome, prepared nearly 500 years ago. Such specimens provide an incredibly important window into human history, illuminating which plants grew where in the world and when. For example, it is only thanks to herbarium specimens collected in the 1550s from a garden in Pisa, Italy, that we know what the first European-grown tomatoes — tomatoes were originally sourced from Mexico — looked like and what their genetic makeup was.

Advanced tools in genetics and chemistry are opening new ways to learn more about past foods, medicines and wild plants and might hold clues for saving future crops from pests, disease and a changing climate. And imagine what scientists 500 years in the future could do with the specimens we collect and save today. Undoubtedly, many of the species I’ve collected and curated will no longer exist in nature in the next century, let alone in another five hundred years. These dried fragments of plant tissue might be all that is left for future generations to ponder.

Over the past dozen years, I’ve been thrilled to see the Emory herbarium grow and once again become a vital resource for botanical research and education on campus. In addition to repairing and annotating specimens, we also brought the collection into the modern era through a digitization program, sharing images and collection data through the Southeast Regional Network of Expertise and Collections, making our herbarium accessible to students and scholars worldwide.

This year, the Emory herbarium celebrates its 75th anniversary. But will it survive another 75 years? The diminishing value placed on university herbaria and taxonomic science threatens the very infrastructure necessary for effective environmental stewardship and the protection of endangered species. Herbaria are not just repositories of historical data; they are the bedrock of environmental conservation efforts. They are nature’s last hope in the battle against biodiversity loss and ecosystem collapse. We must do all we can to save them.

Read the full story here.
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What Bird Flu Means for Milk

On Wednesday, California became the first state to issue a declaration of emergency regarding the avian flu (H5N1). That same day, the Centers for Disease Control and Prevention (CDC) confirmed the first severe case of the flu in a human on US soil and outbreaks in cow herds were detected in Southern California. Still, the […]

On Wednesday, California became the first state to issue a declaration of emergency regarding the avian flu (H5N1). That same day, the Centers for Disease Control and Prevention (CDC) confirmed the first severe case of the flu in a human on US soil and outbreaks in cow herds were detected in Southern California. Still, the threat to humans is low according to the CDC. The agency has traced most human infections back to those handling livestock, and there’s been no reported transmission between people. “I have dairies that are never coming back from this.” But for cows and the dairy they produce, it’s a different story. This year was the first time the flu was detected in cows in the US, and it has ripped through many Western states’ dairy farms with startling speed. Since March, the virus has been found in cow herds of 16 states. For the last few months, infected herds have largely been concentrated in California—the state that makes up about 20 percent of the nation’s dairy industry. Last week, Texas, another one of the nation’s top dairy producing states, saw the reappearance of bird flu after two months without a detected outbreak. In the industry hit hardest by bird flu, the poultry industry, the virus’ spread has resulted in the culling of entire flocks which has lead to higher egg prices on supermarket shelves. Will milk and butter prices soon go the same route? And how worried should you be about consuming dairy? How exactly does bird flu affect dairy cows? Some farmers are first identifying outbreaks in their herds through the color and density of the milk, in what they are coining “golden mastitis,” according to Milkweed, a dairy news publication. As early studies by University of Copenhagen researchers found, the virus latches onto dairy cows mammary glands, creating complications for the dairy industry beyond just the cow fatalities. The virus is proving deadly to cows. According to Colorado State University Professor Jason Lombard, an infectious disease specialist for cattle, the case fatality rates based on a limited set of herds was zero to 15 percent. But California saw an even higher rate of up to 20 percent during a late summer heatwave in the states Central Valley. It was a warning for how the rising number of heatwaves and temps across the country could result in deadlier herd outbreaks in upcoming summers.  For some of the cows that survived, there was a dip in their dairy production of around 25 percent according to multiple experts I spoke with. As a farmer told Bloomberg News, some of the cows aren’t returning to full production levels, an indication of longer lasting effects of the virus. It’s a finding experts are seeing in other parts of the US, too. According to Lombard, this may be due to the severity of the virus in the cow. According to reporting in Milkweed, there may also be “long-tail” bird flu impacts on a cow’s dairy production, health, and reproduction. Additional research is likely needed to understand the extent of these potential longterm effects of the virus and whether they could spell trouble ahead for recovering farms.   A spokesperson with the California Department of Food and Agriculture told Mother Jones, “it’s too soon to know how production has been impacted.” How is this impacting farms and farm workers? As of today, more than half of the people who’ve contracted H5N1 are dairy farmworkers, according to the CDC. This population is particularly vulnerable because they are often the ones handling milking or milking equipment which can lead to spreading the virus. The CDC is recommending employers take steps to reduce their workers’ exposure to the virus by creating health and safety plans. The CDC is working with organizations like the National Center for Farm Worker Health to expand testing, PPE availability, and training. According to Bethany Alcauter, a director at the organization, ensuring dairy farmworkers have access to testing is a tricky situation. The 100,000-some workforce faces barriers to accessing health care and testing, such as an inability to take paid-time off to get themselves tested if they are sick. And the system depends on the producer to decide to bring in the health department to oversee potential outbreaks within herds and staff, which doesn’t always happen because there’s no government mandate. “It’s all recommendations and kindness—that’s what we’re running on. It’s not regulation and enforcement.” “It’s all recommendations and kindness—that’s what we’re running on,” Alcauter says. “It’s not regulation and enforcement.” She believes the testing infrastructure could be strengthened by “recognizing that farm workers can be public-health first responders if they have the knowledge and the access to the right contacts, in the right system.” Outside of navigating farmworker health, farmers face economic impacts when the virus spreads through their herds. “What you’re losing at the end of the day is revenue for your farm when it rolls through,” says Will Loux, vice president of economic affairs for the National Milk Producers Federation. “Depending on the financial situation of an individual farm it can certainly be devastating.”  There are a handful of variables and factors that shape the financial losses of a dairy hit with an outbreak. Luckily, agriculture economist Charles Nicholson at the University of Wisconsin-Madison and some colleagues created a calculator to estimate this financial impact of a bird flu outbreak. Based on Nicholson’s estimates for California, a typical farm of 1500 cattle will lose $120,000 annually. For context, this is about $10,000 more than the median household income of a dairy farmer. Based on those estimates, that would mean California’s farmers have collectively lost about $80 million at most due to avian flu so far. The US Department of Agriculture is providing support for farmers who are impacted by H5N1 outbreaks. In reviewing a few herd datasets in Michigan, Phillip Durst, a dairy and cattle expert, noted that about half a year after an outbreak, herds were producing around 10 percent less than before. Not only do farmers face massive short term losses, they also struggle to return to full capacity again. And, there are high costs associated with putting resources into taking care of sick animals too.  Even strong diaries that had “tip top” biosecurity measures, or comprehensive environmental protection measures in place, are shutting down, according to Anja Raudabaugh, CEO of Western Untied Dairies, a trade organization overseeing farms across California. “I have dairies that are never coming back from this,” Raudabaugh says. “This was just so cataclysmic for them. They’re not going to be able to get over that loss in production hump.” There is some hope around the corner. A vaccine for cows, which the USDA claims is in the works, could help stop the spread and protect remaining uninfected herds. “Until we have a vaccine that we can inoculate them with at an early age, we have no choices except to hope that herd immunity sets in soon,” Raudabaugh says. What’s the effect on milk? In June, the US dropped 1.5 percent in production, around 278 million pounds of milk, compared to 2023. It was one of the early potential indicators of the industry’s vulnerability to this virus. However, since then, the nation’s production rebounded to above 2023 numbers. It’s largely why consumers are not seeing the same impact on the price and availability of dairy products like they are with eggs.  “When one state gets H5N1 there are a lot of other states that tend to pick up the slack. So in general, when you look at the national numbers, you really have to squint to kind of find where H5N1 is in the milk production”,” says Loux. California produces around a fifth of the nation’s dairy, and since August over half of the state’s herds had an outbreak. In October, California saw a near four percent drop in milk production compared to 2023, equating to about 127 million pounds of milk. On Thursday, the USDA released November’s data on milk production showing California with the largest decrease this year of 301 million fewer gallons of milk compared to 2023. That is more than double the decrease of last month. Still, the nation only saw a near 1 percent decrease since 2023. How the next administration handles this virus may spell a different story for the dairy industry and the country. With Trump’s history of downplaying infectious diseases and promoting unfounded cures, and public health cabinet nominations who decry vaccine effectiveness, a human-to-human outbreak could lead to another pandemic. Likely to take over the USDA is Brooke Rollins, who, according to Politico, had less experience in agriculture than others on Trump’s shortlist (though she does have a degree in agriculture development). It’s currently unclear what her plans are for handling this virus and supporting farmers and the industry at large. Rollins did not respond to my request for an interview. Should I be worried about getting sick from drinking milk? Drinking pasteurized milk is safe. For more than 100 years, pasteurization has kept the public safe by killing harmful bacteria and viruses. The CDC is warning against raw milk consumption, on the other hand, due to it potentially having high-levels of bird flu. While there’s yet to be a human case of bird flu traced to raw milk consumption, there is fear that the unpasteurized product could lead to illness. And raw milk loaded with the virus has been linked to deaths in other mammals, like cats. Robert F. Kennedy Jr, the likely soon-to-be director of Health and Human Services under Trump, has a history of promoting raw milk. Earlier this month, Kennedy’s favorite raw milk brand was recalled by California after testing positive for bird flu. Kennedy’s rise to public health power comes at time when raw milk is rising in popularity on TikTok. In response to the spread of bird flu in raw milk, the USDA announced a national strategy requiring milk samples nationwide be tested by the agency. Since officially beginning testing on Monday, 16 new bird flu outbreaks in cow herds have been identified in two states. For now, as the nation continues to work on controlling the spread of bird flu, consider tossing your raw milk out before it does more than just spoil.

Blob-headed fish and amphibious mouse among 27 new species found in ‘thrilling’ Peru expedition

Scientists surprised to find so many animals unknown to science in Alto Mayo, a well-populated regionResearchers in the Alto Mayo region of north-west Peru have discovered 27 species that are new to science, including a rare amphibious mouse, a tree-climbing salamander and an unusual “blob-headed fish”. The 38-day survey recorded more than 2,000 species of wildlife and plants.The findings are particularly surprising given the region’s high human population density, with significant pressures including deforestation and agriculture. Continue reading...

Researchers in the Alto Mayo region of north-west Peru have discovered 27 species that are new to science, including a rare amphibious mouse, a tree-climbing salamander and an unusual “blob-headed fish”. The 38-day survey recorded more than 2,000 species of wildlife and plants.The findings are particularly surprising given the region’s high human population density, with significant pressures including deforestation and agriculture.The expedition was “thrilling to be part of”, said Dr Trond Larsen, senior director of biodiversity and ecosystem science at Conservation International’s Moore Centre for Science, who led the survey. “The Alto Mayo landscape supports 280,000 people in cities, towns and communities. With a long history of land-use change and environmental degradation, I was very surprised to find such high overall species richness, including so many new, rare and threatened species, many of which may be found nowhere else.”Researchers have discovered a new species of amphibious mouse, which belongs to a group of semi-aquatic rodents considered to be among the rarest in the world. Photograph: Ronald DiazThe “new” species include four mammals: a spiny mouse, a short-tailed fruit bat, a dwarf squirrel and the semi-aquatic mouse. Discovering a new species of amphibious mouse was “shocking and exciting”, Larsen said. “It belongs to a group of carnivorous, semi-aquatic rodents, for which the majority of species are exceedingly rare and difficult to collect, giving them an almost mythical status among mammal experts … We only found this amphibious mouse in a single unique patch of swamp forest that’s threatened by encroaching agriculture, and it may not live anywhere else.”The dwarf squirrel is about 14cm long and fast-moving, making it extremely difficult to spot in the dense rainforest.Larsen was particularly satisfied to find a new arboreal salamander “with stubby little legs and mottled chestnut-brown colouration, climbing at chest height in a small patch of white sand forest”. But the most intriguing find was “the blob-headed fish, which looks similar to related catfish species but with a truly bizarre speckled blob-like extension on the end of its head”, Larsen said. “The function of this ‘blob’ remains a complete mystery. If I had to speculate, I might guess it could have something to do with sensory organs in the head, or it may assist with buoyancy control, provide fat reserves or aid in its foraging strategy.”A new species of salamander, which spends most of its time in low vegetation and shrubs, was among the discoveries. Photograph: Trond LarsenSeven other new types of fish were also documented, along with a new species of narrow-mouthed frog, 10 new butterflies and two new dung beetles. Another 48 species that were found may also be new to science, with analysis under way to confirm.The expedition also documented 49 “threatened” species from the IUCN’s red list, including two critically endangered monkeys (the Peruvian yellow-tailed woolly monkey and San Martin titi monkey), two endangered birds (the speckle-chested piculet and long-whiskered owlet) and an endangered harlequin frog.The survey was conducted in June and July 2022, using camera traps, bioacoustics sensors and environmental DNA (eDNA) collected from rivers and other water sources. The team of 13 scientists included Peruvian scientists from Global Earth, as well as seven technical assistants with extensive traditional knowledge from Feriaam (the Indigenous Regional Federation of the Alto Mayo Awajún Communities). Of the 2,046 total species recorded, at least 34 appear to live only in the Alto Mayo landscape or the San Martin region it falls in.Members of the insect team survey a swamp forest using nets and various types of traps. Photograph: Trond LarsenWhile the species have never been described by science (the process of assigning a species and name), some were already known to Indigenous communities. “As Awajún people, we have a great deal of knowledge about our territory,” said Yulisa Tuwi, who assisted with the research on reptiles and amphibians. “We know the value of our plants, how they cure us, how they feed us and we know paths within the forest that have led us to meet different animals.“Although we don’t know scientific names, we’ve developed a classification of these species … I believe the discoveries are for the scientific world, not so much for us, as these species are known under other names or for their usefulness or behaviour in nature.”Researchers hope the survey will bolster conservation efforts, including plans to create a network of local protected areas.

Takeaways From AP's Story on Everglades Restoration Efforts

For decades, largescale engineering projects for development and agriculture drained and partitioned south Florida’s Everglades, a vast wetlands landscape home to endangered and threatened species and a vital source of drinking water for millions of Floridians

EVERGLADES, Fla. (AP) — The Everglades in southern Florida were once about twice the size of New Jersey. Wildlife was abundant and water flowed freely from the Kissimmee River to Lake Okeechobee to the Florida Bay. But decades of engineering projects partitioned and drained the water, invasive species have transformed the land, and pollution from agriculture has impoverished water quality. Today, about half the Everglades original size remains. A massive state-federal project, approved by Congress in 2000 with bipartisan support, aims to undo damages wreaked upon these wetlands. It is projected to cost more than $23 billion and 50 years to complete. More than two decades into it, there are some signs of progress. Wildlife is returning to some areas, regions dominated by the invasive melaleuca tree have dropped 75%, enthusiasm is high as significant projects are finally underway, others gain momentum and funding pours in. But as leaders and agencies race to “get the water right,” there are worries: the projects are billions of dollars over budget and questions remain about whether some will work. Record funding, unprecedented momentum and major projects underway Since 2019, the South Florida Water Management District has completed, broken ground on, or celebrated other milestones on some 70 projects. This year, lawmakers earmarked $1.275 billion, the largest annual amount allocated for the next 12 months of restoration efforts. The water district said they anticipate 12 to 15 years of this pace of construction as long as there's funding. Deemed the flagship project by some is the Everglades Agricultural Area Reservoir Project, which includes a reservoir that will store excess water from Lake Okeechobee and an adjacent engineered wetland that will clean it before it’s discharged. But the reservoir is much smaller than originally planned, and some worry the project won't be large or deep enough to significantly clean water. The Western Everglades Restoration Project had its first groundbreaking in July after decades of advocacy from the Miccosukee Tribe of Indians of Florida. The project's goal is to improve the quantity, quality, timing and distribution of water where the Miccosukee and Seminole tribal lands are. Since sections of the Tamiami Trail started getting elevated, water flows are increasing in the wetlands surrounding the highway, built in 1928 to connect Tampa and Miami. The road cut through the Everglades, acting as a dam and holding back water from ecosystems dependent on it. As parts of the Everglades are rehydrated and habitats reemerge, so are native species such as the wood stork. Wading bird colonies have returned to the Kissimmee River floodplain. Habitats in swamps or shallow lakes called sloughs are increasing in some areas. And flamingos blown in by Hurricane Idalia have stayed in the Everglades. Some scientists have said it is a sign restoration efforts are working.Climate change, urban development and water quality are ongoing challenges in restoration efforts. Sea level rise and salt water intrusion pose threats to biodiversity, drinking water supply, habitats and more, and experts warn that rising temperatures will increase evapotranspiration and decrease water runoff. In a recent report to Congress, a committee of experts acknowledged the enormous challenge of incorporating climate change impacts into restoration efforts. They recommended several actions, including developing a set of climate scenarios that are consistently used across all planning and implementation. Water quality has improved, but pollution from phosphorous remains a concern. Too much has harmed the wilderness' sensitive ecosystem, contributing to toxic algal blooms, oxygen depletion and excessive plant growth. Then there's the people. Florida has undergone decades of rapid population growth, becoming the nations’ fastest-growing state in 2022. Pressure to develop is high. “This is the biggest, most complicated and most expensive ecosystem restoration project in the world,” said Eve Samples, executive director of Friends of the Everglades. “It’s really important that we get it right.” The Associated Press receives support from the Walton Family Foundation for coverage of water and environmental policy. The AP is solely responsible for all content. For all of AP’s environmental coverage, visit https://apnews.com/hub/climate-and-environmentCopyright 2024 The Associated Press. All rights reserved. This material may not be published, broadcast, rewritten or redistributed.Photos You Should See - Sept. 2024

NZ’s dairy industry faces an uncertain future – its fate now lies in its ability to adapt

Fewer cows on the farm and a broader range of farming practices, including involvement in the emerging alternative proteins industry, could help New Zealand’s dairy sector remain viable.

William West/AFP via Getty ImagesNew Zealand’s dairy sector faces an uncertain future due to several challenges, including water pollution, high emissions, animal welfare concerns and market volatility. All of these issues are building tensions and changing public perceptions of dairy farming. In my new research, I argue the time has come for the dairy sector to adopt a “just transition” framework to achieve a fair and more sustainable food future and to navigate the disruptions from alternative protein industries. The concept of a just transition is typically applied to the energy sector in shifting from fossil fuels to renewable energy sources. But a growing body of research and advocacy is calling for the same principles to be applied to food systems, especially for shifting away from intensive animal agriculture. Aotearoa New Zealand’s dairy sector is an exemplary case study for examining the possibilities of a just transition because it is so interconnected in the global production and trade of dairy, with 95% of domestic milk production exported as whole-milk powder to more than 130 countries. Environmental and economic challenges New Zealand’s dairy sector faces significant threats. This includes environmental challenges such as alarming levels of nitrate pollution in waterways caused by intensive agriculture. The sector is also a major source of emissions of biogenic methane from the burps of almost six million cows in the national dairy herd. Debates about how to account for these emissions have gone on for many years in New Zealand. But last month, the coalition government passed legislation to keep agriculture out of the Emissions Trading Scheme. This means livestock farmers, agricultural processors, fertiliser importers and manufacturers won’t have to pay for on-farm emissions. Instead, the government intends to implement a pricing system outside the Emissions Trading Scheme by 2030. To meet emissions targets, it relies on the development of technologies such as methane inhibitors. The development of plant-based and fermentation proteins poses another threat to the dairy sector. Getty Images In addition to environmental challenges, global growth and domestic initiatives in the development of alternative dairy products are changing the future of milk production and consumption. New Zealand dairy giant Fonterra is pursuing the growth of alternative dairy with significant investments in a partnership with Dutch multinational corporation Royal-DSM. This supports precision fermentation start-up Vivici, which already has market-ready products such as whey protein powder and protein water. Fonterra’s annual report states it anticipates a rise in customer preference towards dairy alternatives (plant-based or precision-fermentation dairy) due to climate-related concerns. The company says these shifting preferences could pose significant business risks for future dairy production if sustainability expectations cannot be met. Pathways to a just transition for dairy What happens when one the pillars of the economy becomes a major contributor to environmental degradation and undermines its own sustainability? Nitrate pollution and methane emissions threaten the quality of the land and waterways the dairy sector depends on. In my recent study which draws on interviews with people across New Zealand’s dairy sector, three key transition pathways are identified, which address future challenges and opportunities. Deintensification: reducing the number of dairy cows per farm. Diversification: introducing a broader range of farming practices, landuse options and market opportunities. Dairy alternatives: government and industry support to help farmers participate in emerging plant-based and precision-fermentation industries. While the pathways are not mutually exclusive, they highlight the socioeconomic and environmental implications of rural change which require active participation and engagement between the farming community and policy makers. The Ministry of Business, Innovation and Employment recently published a guide to just transitions. It maps out general principles such as social justice and job security. But the guide is light on advice for agricultural transitions. My work puts forward recommendations to shape future policy for a more just and sustainable dairy future. This includes issues such as navigating intensification pressures, supporting the development of alternative proteins and fundamentally supporting farmer agency in the transition process. For the dairy transition to be fair and sustainable, we need buy-in from leadership and support from government, the dairy sector and the emerging alternative dairy industry to help primary producers and rural communities. This needs to be specific to different regions and farming methods. The future of New Zealand’s dairy industry depends on its ability to adapt. Climate adaptation demands balancing social license, sustainable practices and disruptions from novel protein technologies. Milena Bojovic received funding from Macquarie University as part of the RTP PhD Scholarship.

A new method to detect dehydration in plants

Sensors developed by SMART researchers are capable of detecting pH changes in plant xylem enable farmers to detect drought stress up to 48 hours before visible physical symptoms manifest.

Have you ever wondered if your plants were dry and dehydrated, or if you’re not watering them enough? Farmers and green-fingered enthusiasts alike may soon have a way to find this out in real-time. Over the past decade, researchers have been working on sensors to detect a wide range of chemical compounds, and a critical bottleneck has been developing sensors that can be used within living biological systems. This is all set to change with new sensors by the Singapore-MIT Alliance for Research and Technology (SMART) that can detect pH changes in living plants — an indicator of drought stress in plants — and enable the timely detection and management of drought stress before it leads to irreversible yield loss.Researchers from the Disruptive and Sustainable Technologies for Agricultural Precision (DiSTAP) interdisciplinary research group of SMART, MIT’s research enterprise in Singapore, in collaboration with Temasek Life Sciences Laboratory and MIT, have pioneered the world’s first covalent organic framework (COF) sensors integrated within silk fibroin (SF) microneedles for in-planta detection of physiological pH changes. This advanced technology can detect a reduction in acidity in plant xylem tissues, providing early warning of drought stress in plants up to 48 hours before traditional methods.Drought — or a lack of water — is a significant stressor that leads to lower yield by affecting key plant metabolic pathways, reducing leaf size, stem extension, and root proliferation. If prolonged, it can eventually cause plants to become discolored, wilt, and die. As agricultural challenges — including those posed by climate change, rising costs, and lack of land space — continue to escalate and adversely affect crop production and yield, farmers are often unable to implement proactive measures or pre-symptomatic diagnosis for early and timely intervention. This underscores the need for improved sensor integration that can facilitate in-vivo assessments and timely interventions in agricultural practices.“This type of sensor can be easily attached to the plant and queried with simple instrumentation. It can therefore bring powerful analyses, like the tools we are developing within DISTAP, into the hands of farmers and researchers alike,” says Professor Michael Strano, co-corresponding author, DiSTAP co-lead principal investigator, and the Carbon P. Dubbs Professor of Chemical Engineering at MIT.SMART’s breakthrough addresses a long-standing challenge for COF-based sensors, which were — until now — unable to interact with biological tissues. COFs are networks of organic molecules or polymers — which contain carbon atoms bonded to elements like hydrogen, oxygen, or nitrogen — arranged into consistent, crystal-like structures, which change color according to different pH levels. As drought stress can be detected through pH level changes in plant tissues, this novel COF-based sensor allows early detection of drought stress in plants through real-time measuring of pH levels in plant xylem tissues. This method could help farmers optimize crop production and yield amid evolving climate patterns and environmental conditions.“The COF-silk sensors provide an example of new tools that are required to make agriculture more precise in a world that strives to increase global food security under the challenges imposed by climate change, limited resources, and the need to reduce the carbon footprint. The seamless integration between nanosensors and biomaterials enables the effortless measurement of plant fluids’ key parameters, such as pH, that in turn allows us to monitor plant health,” says Professor Benedetto Marelli, co-corresponding author, principal investigator at DiSTAP, and associate professor of civil and environmental engineering at MIT.In an open-access paper titled, “Chromatic Covalent Organic Frameworks Enabling In-Vivo Chemical Tomography” recently published in Nature Communications, DiSTAP researchers documented their groundbreaking work, which demonstrated the real-time detection of pH changes in plant tissues. Significantly, this method allows in-vivo 3D mapping of pH levels in plant tissues using only a smartphone camera, offering a minimally invasive approach to exploring previously inaccessible environments compared to slower and more destructive traditional optical methods.DiSTAP researchers designed and synthesized four COF compounds that showcase tunable acid chromism — color changes associated with changing pH levels — with SF microneedles coated with a layer of COF film made of these compounds. In turn, the transparency of SF microneedles and COF film allows in-vivo observation and visualization of pH spatial distributions through changes in the pH-sensitive colors.“Building on our previous work with biodegradable COF-SF films capable of sensing food spoilage, we’ve developed a method to detect pH changes in plant tissues. When used in plants, the COF compounds will transition from dark red to red as the pH increases in the xylem tissues, indicating that the plants are experiencing drought stress and require early intervention to prevent yield loss,” says Song Wang, research scientist at SMART DiSTAP and co-first author.“SF microneedles are robust and can be designed to remain stable even when interfacing with biological tissues. They are also transparent, which allows multidimensional mapping in a minimally invasive manner. Paired with the COF films, farmers now have a precision tool to monitor plant health in real time and better address challenges like drought and improve crop resilience,” says Yangyang Han, senior postdoc at SMART DiSTAP and co-first author.This study sets the foundation for future design and development for COF-SF microneedle-based tomographic chemical imaging of plants with COF-based sensors. Building on this research, DiSTAP researchers will work to advance this innovative technology beyond pH detection, with a focus on sensing a broad spectrum of biologically relevant analytes such as plant hormones and metabolites.The research is conducted by SMART and supported by the National Research Foundation of Singapore under its Campus for Research Excellence And Technological Enterprise program.

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