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Rural families use innovative DNA tool to track pig farm pollution

News Feed
Friday, April 4, 2025

Communities living near factory farms are using a new scientific tool to track pig feces in their homes — and fight back.Hana Mensendiek reports for U.S. Right To Know.In short:Residents in Duplin County, North Carolina, worked with Johns Hopkins scientists to create Pig-2-Bac, a tool that identifies pig manure DNA in household dust.The data helps communities prove that fecal waste from nearby factory farms is contaminating their air and homes, strengthening legal cases against polluters.Researchers say the tool could support lawsuits and Environmental Protection Agency enforcement, especially as new clean air rules targeting livestock emissions take shape.Key quote:“When we’re telling the powers that be how bad it is sometimes, that our eyes are watering, our nose is running, and we’re coughing, sometimes we hear, ‘oh, it can’t be that bad’”.— Devon Hall Sr., director of Rural Empowerment Association for Community HelpWhy this matters:Factory farm air pollution is a serious but underregulated health threat, linked to asthma, respiratory illness, and mental health conditions.For communities buried in the stink of Big Ag, this little dust test could be a breath of fresh air — and a shot at justice. As federal oversight stalls and right-to-farm laws shield industry, tools like Pig-2-Bac give communities a rare shot at holding powerful companies accountable. Read more from EHN:Peak Pig: Read our full series on the fight for the soul of rural America.

Communities living near factory farms are using a new scientific tool to track pig feces in their homes — and fight back.Hana Mensendiek reports for U.S. Right To Know.In short:Residents in Duplin County, North Carolina, worked with Johns Hopkins scientists to create Pig-2-Bac, a tool that identifies pig manure DNA in household dust.The data helps communities prove that fecal waste from nearby factory farms is contaminating their air and homes, strengthening legal cases against polluters.Researchers say the tool could support lawsuits and Environmental Protection Agency enforcement, especially as new clean air rules targeting livestock emissions take shape.Key quote:“When we’re telling the powers that be how bad it is sometimes, that our eyes are watering, our nose is running, and we’re coughing, sometimes we hear, ‘oh, it can’t be that bad’”.— Devon Hall Sr., director of Rural Empowerment Association for Community HelpWhy this matters:Factory farm air pollution is a serious but underregulated health threat, linked to asthma, respiratory illness, and mental health conditions.For communities buried in the stink of Big Ag, this little dust test could be a breath of fresh air — and a shot at justice. As federal oversight stalls and right-to-farm laws shield industry, tools like Pig-2-Bac give communities a rare shot at holding powerful companies accountable. Read more from EHN:Peak Pig: Read our full series on the fight for the soul of rural America.



Communities living near factory farms are using a new scientific tool to track pig feces in their homes — and fight back.

Hana Mensendiek reports for U.S. Right To Know.


In short:

  • Residents in Duplin County, North Carolina, worked with Johns Hopkins scientists to create Pig-2-Bac, a tool that identifies pig manure DNA in household dust.
  • The data helps communities prove that fecal waste from nearby factory farms is contaminating their air and homes, strengthening legal cases against polluters.
  • Researchers say the tool could support lawsuits and Environmental Protection Agency enforcement, especially as new clean air rules targeting livestock emissions take shape.

Key quote:

“When we’re telling the powers that be how bad it is sometimes, that our eyes are watering, our nose is running, and we’re coughing, sometimes we hear, ‘oh, it can’t be that bad’”.

— Devon Hall Sr., director of Rural Empowerment Association for Community Help

Why this matters:

Factory farm air pollution is a serious but underregulated health threat, linked to asthma, respiratory illness, and mental health conditions.For communities buried in the stink of Big Ag, this little dust test could be a breath of fresh air — and a shot at justice. As federal oversight stalls and right-to-farm laws shield industry, tools like Pig-2-Bac give communities a rare shot at holding powerful companies accountable.

Read more from EHN:

Peak Pig: Read our full series on the fight for the soul of rural America.

Read the full story here.
Photos courtesy of

‘Yoda’ for scientists: the outsider ecologist whose ideas from the 80s just might fix our future

John Todd’s eco-machine stunned experts by using natural organisms to remove toxic waste from a Cape Cod lagoon. Forty years on, he wants to build a fleet of them to clean up the oceansJohn Todd remembers the moment he knew he was really on to something: “There was no question that it was at the Harwich dump in 1986,” he recalls. This was in Cape Cod, Massachusetts, close to where Todd still lives. Hidden away from the picturesque beaches was the town landfill, including lagoons of toxic waste from septic tanks, which was being left to seep into the groundwater below. So Todd, then a 45-year-old biologist, decided to design a solution. What he was “on to”, he came to realise, was not just a natural way of removing pollution from water, it was a holistic approach to environmental restoration that was way ahead of its time, and possibly still is.An early eco-machine purifying toxic waste on Cape Cod in 1986. Photograph: John Todd Continue reading...

John Todd remembers the moment he knew he was really on to something: “There was no question that it was at the Harwich dump in 1986,” he recalls. This was in Cape Cod, Massachusetts, close to where Todd still lives. Hidden away from the picturesque beaches was the town landfill, including lagoons of toxic waste from septic tanks, which was being left to seep into the groundwater below. So Todd, then a 45-year-old biologist, decided to design a solution. What he was “on to”, he came to realise, was not just a natural way of removing pollution from water, it was a holistic approach to environmental restoration that was way ahead of its time, and possibly still is.Todd’s solution to the Harwich pollution problem was both beautifully simple and unfathomably complex. Next to the lagoons, he assembled a line of 15 clear-sided fiberglass tanks, each about the height of a person, and filled them with water containing all the different life forms he could find from local ponds, marshes and streams – plants, bugs, bacteria, fungi, general gunk. The water could be pumped from one tank to the next, and the living matter inside them soon organised itself into a series of different ecosystems. Todd found that he could put in polluted water from the lagoons at one end of the line of tanks and by the time it came out the other end, 10 days later, it was clean enough to drink.“To see that water, and to see all the organisms in the tanks, including fishes, looking and being so healthy, I was just amazed,” he says.Todd didn’t know exactly what was going on in those tanks – he would later discover that various microorganisms were finding uses for the toxins and heavy metals – but he didn’t need to, he says. “All I really knew going into it was all the kingdoms of life had to be in there. Nobody knew which ones could cope with what we had, but there’s probably no problem they haven’t solved in one way or another over the last three or four billion years.” Todd calls it “biological intelligence”.“The thing that separates myself and my colleagues is that we really do celebrate the living world for what it’s beginning to show us it can do,” he says.There’s just so many positive directions that are possible and economically feasibleTodd christened his invention the “eco-machine”, and spent the next four decades understanding and refining it, applying it to everything from treating wastewater to growing food to repairing damaged ecosystems. Now aged 85, he is still at work, inventing new solutions to a set of environmental problems that has only deepened.Todd’s latest proposal is his most ambitious yet, something he calls “the Fleet”. The idea is very simple, he says: a fleet of sailing vessels, each containing one of his eco-machines. These could be deployed to clean up coastal environmental disasters on site, wherever they are needed. Each sailing eco-machine, Todd says, is “an incubator of beneficial organisms into the environment surrounding it”. Each vessel would take polluted sea water and not only clean it but add helpful organisms and nutrients to it, such as diatoms, which he calls the “baby milk” of the marine food chain.It sounds romantic, challenging, far-fetched even, but between his knowledge of ecological design and naval architecture, Todd seems to have figured it all out: the design of the sailing vessels (inspired by 19th-century Thames barges); how to keep the tanks full of liquid stable on board; energy and lighting; how much water these relatively small vessels could treat. Powered by wind and sun, the entire operation would be fossil fuel-free, he says, “and the fact that they’re going to be so beautiful, they’re going to be the sort of technology neighbourhoods are going to want to have in their back yards”.Maybe I should just slow down and let them catch up before I go galloping off with sailing eco-machines. But I can’t, I’m not young enoughTodd estimates a fleet of 30 such vessels could clean up maritime pollution for about a quarter of the cost of conventional processes. He would love to get two 40ft prototype vessels built and put them to work on nearby Waquoit Bay, which would cost about $20m (£15.5m), he says. Like many coastal areas, Cape Cod’s inshore waters are dying, largely as a result of pollution from domestic sewage. The sea-run brook trout, the shellfish and the eelgrass he saw in the 1960s are hardly to be found any more. Every summer, scores of Massachusetts beaches close after heavy rains because of sewage pollution.Todd knows how to fix it, and much more besides, he believes, but, as has been the case since the 1970s, his ideas are still too wide-ranging for the compartmentalised scientific world to fully understand, he says. Despite having won numerous awards and accolades, he has always been something of an outsider scientist. “Maybe I should just slow down, and let them catch up before I go galloping off with sailing eco-machines,” he says. “But I can’t, I’m not young enough.”Born in Ontario, Canada, Todd has always loved the water and boats. His father designed and built yachts as a hobby, and he has done the same. He studied agriculture and marine biology, but by the time he came to Cape Cod in 1969 and took a post at the Woods Hole Oceanographic Institute, he was beginning to chafe against the strictures and compartmentalisation of academia. He was also becoming increasingly worried about the environment.In 1969, Todd co-founded the New Alchemy Institute with his wife, Nancy, and a colleague, Bill McClarney – not quite a hippy commune, an alternative research institute (associates included visionary architect Richard Buckminster Fuller, economist EF Schumacher and Lynn Margulis, co-creator of the Gaia hypothesis). “I decided I wasn’t a doomwatch ecologist,” Todd says. “Doomwatch can be left to other people, I was more interested in solutions.”The 13-acre (five-hectare) New Alchemy site is a few minutes’ drive from where he and Nancy still live. Its mission was to explore joined-up, sustainable ways of living: energy, food, shelter, waste. They planted organic crops, farmed fish and built wind turbines and experimental architecture – all underpinned by a belief that the more systems they had working together, the stronger the whole would be, just like the organisms in one of his eco-machines.That first eco-machine, in Harwich, ought to have gained Todd national attention; instead it earned him a lawsuit from the state regulators. Apparently nobody was permitted to treat waste without a civil engineering degree. “I appeared on the front page of the Boston Globe, described with a word I’d never heard before, ‘scofflaw’,” he says, chuckling. “The head of the Environmental Protection Agency heard about my fight and sent one of his scientists up to review the data and what I was doing. He went back and he said, ‘He’s legitimate.’” The EPA subsequently honoured him with an award (indeed, an EPA study in 2002 found Todd’s technology to be “typically cost competitive with more conventional wastewater treatment systems”).After the New Alchemy Institute wound down, Todd founded his own ecological consultancy, Ocean Arks International. It has designed and built more than 100 eco-machine systems to treat problems of pollution, wastewater and food production around the world, from the US to China, Australia, Brazil and Scotland. He has drawn up proposals for islands owned by Richard Branson, Marlon Brando and Leonardo DiCaprio (only Branson actually implemented them).Todd’s eco-machines are cheaper and more effective than industrial alternatives, he says, and are even capable of treating chemicals that have been impossible to break down using conventional methods, such as grades of crude oil and mining waste. They are also far more sustainable – powered almost entirely by sunlight.All of which begs the question: why aren’t they more widely used? One reason is prevailing attitudes, Todd suggests. “Civil engineering schools tend to eschew innovation and invention. Hardware is tinkered with and new components are added at a pretty slow pace. A 100-year-old waste water treatment plant looks pretty similar to a contemporary one.”At the same time, for all his scientific skills, Todd is the first to admit he has never been much of a businessman. His career is strewn with startups and partnerships that fell by the wayside for various reasons. However, many of his ideas have seeped into the mainstream and some of his ideas have been developed in a more commerical way, including by his son, Jonathan.It is not just Todd who can vouch for their efficacy. Three years ago, under Todd’s guidance, the Dutch environmental restoration company the Weather Makers built their own eco-machine in Den Bosch, in the Netherlands, with 12 water tanks housed under a 50ft-diameter geodesic dome. They were seeking to process local water polluted by intensive farming into fertile, nutrient-rich water, and to desalinate marine sediments to use in their ecosystem regeneration projects in places such as the Sinai desert.Just as Todd did in Harwich, the Weather Makers’ co-founder Ties van der Hoeven found the results were “amazing”. “Everything he said was just spot on, and certain things really overtook our expectations,” says van der Hoeven. “Everything is growing like crazy.” Tomato plants growing inside the dome with the treated water are 20-30% bigger than ones grown with groundwater, he says.Like many others, he did not really understand Todd’s approach until he put it into practice. “Hopefully now, with this planetary craziness we’re entering into, we’re starting to recognise these kinds of holistic solutions better,” he says. He likens Todd to Yoda from the Star Wars movies – the keeper of an ecological wisdom born in the 1960s and 70s but forgotten, “a bit like the Renaissance being forgotten in the middle ages, and then now people are picking it up again”.As ever, Todd remains an optimist. “I feel we know how to fix the ocean, I feel we know how to fix the deserts, I feel we know how to fix the urban environment, and so we’ve just got to get the story moving,” he says. “There’s just so many positive directions that are possible and economically feasible. If we could get the larger public really excited about how nature can be made to clean up, then people would say, ‘we can do it. We’ve got a future.’”

SoCal regulators weigh weakened rules for emissions-free appliances

In 2021, Gayatri Sehgal moved away from the fresh air of upstate New York and into the smog-choked city of Los Angeles. The pollution quickly made their asthma worse. On a given day, Sehgal might be short of breath or wheezing as their airways inflame. “I’ve felt valid anxieties about the air,” the 28-year-old said.…

In 2021, Gayatri Sehgal moved away from the fresh air of upstate New York and into the smog-choked city of Los Angeles. The pollution quickly made their asthma worse. On a given day, Sehgal might be short of breath or wheezing as their airways inflame. “I’ve felt valid anxieties about the air,” the 28-year-old said. Their symptoms are bad enough that they don’t know if they can continue living in the region. At a March 21 public meeting, Sehgal, a mental health worker focused on climate issues and an intern with the LA-area chapter of the Sierra Club, urged Southern California regulators not to delay in adopting clean air rules that would support the state’s plan to unleash millions of electric heat pumps — and net a major health win for residents like Sehgal. Regulators are deciding just how much to heed appeals like these. The South Coast Air Quality Management District is weighing new rules to reduce emissions of nitrogen oxides, or NOx, the smog-forming byproducts of combustion, by limiting the sale of home gas-fired furnaces and water heaters. About 10 million of these fossil-fueled appliances are currently installed throughout the region, home to more than 17 million residents across Los Angeles, Orange, Riverside, and San Bernardino counties. Although an earlier draft of the rules would have effectively banned the sale of gas-fired units, the agency’s staff walked back the idea after vigorous opposition from industry, business organizations, city governments, and others. Now, the agency is proposing to allow manufacturers to gradually ratchet down the amount of gas equipment they sell so long as they pay nominal mitigation fees. Starting in 2027, manufacturers would be required to aim for a sales target of 30% for appliances that meet zero-NOx emissions standards, i.e., heat pumps and heat-pump water heaters. The fraction would increase to 90% by 2036, but the rules would never require sales of gas appliances to actually stop. Some advocates are still pushing for updates with stronger teeth, saying the proposed fees are likely too small to get manufacturers to comply. But over two years into a prolonged process that has only diluted the initial proposal, supporters are also urging the agency to get the rules done as soon as possible and lock in their considerable health and environmental benefits. The full board for the district is expected to vote on the rules on June 6. NOx emissions are a nationwide problem that many states are actively working to solve. But the challenge is especially urgent in Southern California, which has some of the worst air quality in the country, according to the American Lung Association, a supporter of stronger draft rules. “We fail to meet several federal air quality standards,” said Sarah Rees, deputy executive officer at the air district, the oldest in the nation. ​“We really need to take all actions that we can to reduce those emissions.” Most NOx is from transportation sources, which are regulated by state and federal agencies. But under the SCAQMD’s jurisdiction are the fossil fuel–burning appliances in residential and commercial buildings. These pollution sources are responsible for roughly 76,000 asthma attacks, 30,000 lost school days, and 130 premature deaths each year, according to the advocacy group Coalition for Clean Air and climate think tank RMI. The annual health costs total about $2 billion. The district first set NOx emission limits on residential space heaters with Rule 1111 and residential water heaters with Rule 1121 in 1978. Regulators have progressively strengthened them over time, first beginning to consider the shift to zero-emission equipment in 2016. Though the proposed updates to the rules don’t represent a wholesale shift to NOx-free units, they could still reduce NOx emissions by 6 tons per day by 2060. For comparison, the more ambitious rules, which included space heaters in commercial buildings, would have enabled the South Coast to eliminate 10 tons of NOx per day by 2054. Still, 6 tons per day is ​“a pretty big chunk,” Rees told Canary Media. ​“It’s about 10% of all of the stationary source emissions [from every factory, refinery, power plant, etc.] in our region.” The public health benefits would be enormous, according to the district’s socioeconomic impact analysis: more than $25 billion from 2027 to 2053, including about 2,500 lives saved. Zero-NOx emissions standards taking off Zero-NOx standards for new home appliances aren’t a new concept. San Francisco Bay Area regulators adopted such rules in 2023, and the California Air Resources Board is developing a similar proposal for the entire state. The trend is growing outside of California, too. Maryland is developing zero-emissions rules for heating homes and businesses, and in 2023, eight more states — Connecticut, Hawaii, Massachusetts, New York, Oregon, Pennsylvania, Rhode Island, and Washington — committed to exploring such standards. The South Coast also has a recent history of health- and climate-aligned rulemaking. In 2023, regulators adopted a first-of-its-kind rule to electrify large commercial bakeries and kitchens. In 2024, they passed another landmark rule to electrify small industrial boilers and large water heaters. However, this time, critics got the district to refrain from requiring new space and water heaters be electric.

The latest update on NZ’s state of the environment is sobering – but there are glimmers of progress

Soil erosion, water pollution, waste production and the loss of biodiversity are among multiple pressures degrading New Zealand’s environment.

Shutterstock/synthetickIf left unaddressed, many environmental changes in Aotearoa New Zealand could threaten livelihoods, health, quality of life and infrastructure for generations to come, according to the latest update on the state of the environment. The Ministry for the Environment and StatsNZ produce an environmental assessment every three years, collating data and trends on air quality, freshwater and marine environments, the land and climate. The latest report shows that long-term drivers of change – including international influences, economic demands and climate change – mean many natural systems have become less resilient and are at risk of collapse. But it also highlights improvements in urban air quality and reduced waste flows to landfill. Real risks to people, communities and places Many environmental trends in New Zealand are sobering. Soil erosion is increasing and continues to degrade downstream freshwater and marine ecosystems. Soils misplaced from land, including through landslides or gradual loss of topsoil, can threaten homes and infrastructure and reduce the potential for growing food or storing carbon. Climate change is projected to increase erosion rates by up to 233%, depending on future emissions scenarios. Native forests are most effective at reducing soil erosion, but exotic forests can also help. The report shows the area planted in exotic forest has increased by 12% (220,922 hectares) between 1996 and 2018, with most of this new area coming from exotic grassland. Landfill contaminants, including leachates and microplastics, threaten soil health. New Zealand remains the highest producer of waste to landfill per capita among developed countries, but waste flows to landfill have dropped by 11% in 2023, compared with a 2018 peak. The report offers another glimmer of progress. While air pollution still affects health, long-term air quality is gradually improving thanks to a shift away from cars with combustion engines. Population growth and urban development are displacing green spaces. Getty Images Water quality and green spaces What happens on land commonly flows into water, often affecting human health and recreation. The report shows that between 2019 and 2024, nearly half of all groundwater monitoring sites failed to meet drinking water standards for E. coli at least once. Nitrate concentrations also rose at around half of all sites. Freshwater ecosystems are critically affected by the space we give them. Urban development can displace natural features such as wetlands and floodplains, which store water and provide a buffer against extreme weather events. Four in five New Zealanders live in urban areas and the report shows green spaces have not kept up with population growth. Continued development near rivers and on floodplains, without maintaining natural buffers, increases risks to homes and infrastructure as flood extremes worsen with climate change. Coastal areas face their own challenges. Rising seas and storm surges threaten not only homes and roads, but also culturally significant places. As many as 420 archaeological sites on public conservation land are at risk of coastal inundation and 191 marae are within one kilometre of the coast. Livelihoods and biodiversity at risk New Zealand is a globally significant biodiversity hotspot and natural landscapes are central to cultural identity. The land and waters, and species we share them with, are inseparable from Māori identity. The economy, from agriculture to tourism, also depends on thriving ecosystems. But many pressures on biodiversity are worsening, according to the report. About 94% of native reptiles and 78% of native birds are threatened or at risk of extinction. Extreme weather events (expected to increase with climate change) threaten food and fibre crops. The report estimates the recovery of these sectors from Cyclone Gabrielle will cost up to NZ$1.1 billion. Pest species continue to damage ecosystems at a cost of $9.2 billion in 2019–20, including primary-sector losses of $4.3 billion. Wilding conifers are a particular concern, having invaded an estimated two million hectares of land, primarily on the conservation estate. Without careful management, the report projects they could cover up to 25% of New Zealand’s land within 30 years. The restoration of Te Auaunga, Auckland’s longest urban river, is helping to reduce flooding and improve recreational spaces. Shutterstock/aiyoshi597 Stories behind the numbers For the first time, the ministry has released a companion report to share stories of hope. It highlights the links between environmental challenges and how nature-based approaches can benefit both people and the environment. In Tairāwhiti, for instance, a native forest restoration project is protecting Gisborne’s drinking water supply. A large block of commercial pine is being replaced with native forests to stabilise erodible land, filter water runoff before it reaches dams, and provide habitat for native flora and fauna. In Auckland, the Making Space for Water program is restoring Te Auaunga (Oakley Creek), the city’s longest urban river. The work includes widening the river channel, removing restrictive structures and planting native vegetation to regenerate historical wetland habitats. Along with reducing flooding in the area, these changes provide improved recreational spaces for people. The report notes the complexity of interactions between people and the natural environment, which means that many impacts cannot be seen straight away. For instance, nitrates move through groundwater very slowly and we may continue to see the effects of past decisions for some time yet. Furthermore, climate change can amplify many environmental stressors. The state of our environment mirrors our collective decisions. This update offers an opportunity to guide those decisions towards a more resilient future. Christina McCabe is affiliated with Te Whare Wānanga o Waitaha / The University of Canterbury, and Te Pūnaha Matatini, a Centre of Research Excellence.

Rural families use innovative DNA tool to track pig farm pollution

Communities living near factory farms are using a new scientific tool to track pig feces in their homes — and fight back.Hana Mensendiek reports for U.S. Right To Know.In short:Residents in Duplin County, North Carolina, worked with Johns Hopkins scientists to create Pig-2-Bac, a tool that identifies pig manure DNA in household dust.The data helps communities prove that fecal waste from nearby factory farms is contaminating their air and homes, strengthening legal cases against polluters.Researchers say the tool could support lawsuits and Environmental Protection Agency enforcement, especially as new clean air rules targeting livestock emissions take shape.Key quote:“When we’re telling the powers that be how bad it is sometimes, that our eyes are watering, our nose is running, and we’re coughing, sometimes we hear, ‘oh, it can’t be that bad’”.— Devon Hall Sr., director of Rural Empowerment Association for Community HelpWhy this matters:Factory farm air pollution is a serious but underregulated health threat, linked to asthma, respiratory illness, and mental health conditions.For communities buried in the stink of Big Ag, this little dust test could be a breath of fresh air — and a shot at justice. As federal oversight stalls and right-to-farm laws shield industry, tools like Pig-2-Bac give communities a rare shot at holding powerful companies accountable. Read more from EHN:Peak Pig: Read our full series on the fight for the soul of rural America.

Communities living near factory farms are using a new scientific tool to track pig feces in their homes — and fight back.Hana Mensendiek reports for U.S. Right To Know.In short:Residents in Duplin County, North Carolina, worked with Johns Hopkins scientists to create Pig-2-Bac, a tool that identifies pig manure DNA in household dust.The data helps communities prove that fecal waste from nearby factory farms is contaminating their air and homes, strengthening legal cases against polluters.Researchers say the tool could support lawsuits and Environmental Protection Agency enforcement, especially as new clean air rules targeting livestock emissions take shape.Key quote:“When we’re telling the powers that be how bad it is sometimes, that our eyes are watering, our nose is running, and we’re coughing, sometimes we hear, ‘oh, it can’t be that bad’”.— Devon Hall Sr., director of Rural Empowerment Association for Community HelpWhy this matters:Factory farm air pollution is a serious but underregulated health threat, linked to asthma, respiratory illness, and mental health conditions.For communities buried in the stink of Big Ag, this little dust test could be a breath of fresh air — and a shot at justice. As federal oversight stalls and right-to-farm laws shield industry, tools like Pig-2-Bac give communities a rare shot at holding powerful companies accountable. Read more from EHN:Peak Pig: Read our full series on the fight for the soul of rural America.

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